Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
UVM | rs10185727 | chr2:201803711 | G/A | 2.98E-7 | 67 | 24.77 | 27.9 | 1.27 | KM Plot |
UVM | rs10204787 | chr2:201762147 | C/T | 2.98E-7 | 67 | 24.77 | 27.9 | 1.27 | KM Plot |
UVM | rs10231083 | chr7:151119265 | A/G | 0.00011 | 67 | 26.98 | 24.45 | 7.6 | KM Plot |
UVM | rs10429942 | chr1:114746825 | C/G | 0.00011 | 67 | 7.6 | 24.6 | 29.58 | KM Plot |
UVM | rs10510765 | chr3:53746206 | C/G | 1.34E-12 | 67 | 12.33 | 26.6 | 27.9 | KM Plot |
UVM | rs10772006 | chr12:9813867 | A/G | 0.000125 | 67 | 7.6 | 21.8 | 27.88 | KM Plot |
UVM | rs10844236 | chr12:9786114 | C/T | 0.000169 | 65 | 27.37 | 22.33 | 7.6 | KM Plot |
UVM | rs10844327 | chr12:9805233 | T/G | 0.000125 | 67 | 27.88 | 21.8 | 7.6 | KM Plot |
UVM | rs10844350 | chr12:9811137 | G/A | 0.000125 | 67 | 27.88 | 21.8 | 7.6 | KM Plot |
UVM | rs10844351 | chr12:9811149 | A/G | 0.000125 | 67 | 27.88 | 21.8 | 7.6 | KM Plot |
UVM | rs10844352 | chr12:9811187 | C/A | 0.000125 | 67 | 27.88 | 21.8 | 7.6 | KM Plot |
UVM | rs10844353 | chr12:9811207 | G/A | 0.000125 | 67 | 27.88 | 21.8 | 7.6 | KM Plot |
UVM | rs10844359 | chr12:9812714 | A/G | 0.000125 | 67 | 7.6 | 21.8 | 27.88 | KM Plot |
UVM | rs10844368 | chr12:9814587 | A/T | 0.000125 | 67 | 27.88 | 21.8 | 7.6 | KM Plot |
UVM | rs10844369 | chr12:9814588 | A/C | 0.000125 | 67 | 27.88 | 21.8 | 7.6 | KM Plot |